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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 737ChIP-seq
  • 222total RNA-seq
  • 134single cell RNA-seq
  • 61ATAC-seq
  • 27snATAC-seq
  • 17WGBS
  • 11DNase-seq
  • 4RRBS
  • 2FAIRE-seq
  • 1GRO-seq
  • 1Hi-C
Assay category
  • 737DNA binding
  • 356Transcription
  • 101DNA accessibility
  • 21DNA methylation
  • 13D chromatin structure
Target of assay
  • 421transcription factor
  • 165histone modification
  • 164histone
  • 146control
  • 87broad histone mark
  • 83RNA binding protein
  • 82recombinant protein
  • 77narrow histone mark
  • 33chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 324November, 2017
  • 233August, 2017
  • 88November, 2018
  • 76February, 2023
  • 73September, 2018
  • 60October, 2018
  • 51December, 2017
  • 50July, 2018
  • 45February, 2021
  • 44April, 2018
  • 41September, 2020
  • 35December, 2018
  • 30January, 2019
  • 24May, 2022
  • 17October, 2017
  • 11September, 2017
  • 7August, 2020
  • 3August, 2018
  • 3June, 2018
  • 1January, 2018
  • 1March, 2019
Available data
  • 3101bam
  • 2910bigWig
  • 1685bed narrowPeak
  • 1469tsv
  • 1217fastq
  • 1025bigBed narrowPeak
  • 358tagAlign
  • 321bed broadPeak
  • 284bigBed broadPeak
  • 248bed bed3+
  • 158txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 19hic
  • 16bedpe bed3+
  • 8csv
  • 7bed bed3
  • 5hdf5
  • 4tar
  • 3cool
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1210Homo sapiens
Biosample type
  • 427cell line
  • 409primary cell
  • 377tissue
  • in vitro differentiated cells
  • 4stem cell
Organ
  • 471pancreas
  • 450liver
  • 238epithelium
  • 60blood
  • 60bodily fluid
  • 46connective tissue
  • 43adipose tissue
  • 24spleen
  • 21brain
  • 6vasculature
  • 3blood vessel
  • 2musculature of body
Project
  • 1048AMP
  • 169HPAP
Genome assembly (visualization)
  • 890hg19
  • 833GRCh38
  • 1hg18
Lab
  • 1022AMP-T2D consortium
  • 169Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 28inconsistent control
  • 27audit script error
  • 7inconsistent ontology term
Audit category:
  • 83missing controlled_by
Audit category:
  • 39inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
biosample_type!
  • in vitro differentiated cells
BIOSAMPLE
ASSAY

1217 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
RRBS
FAIRE-seq
GRO-seq
Hi-C
cell line
HepG2360511
GM1287860
primary cell
pancreatic alpha cell135212136
Langerhans cell3427
pancreatic beta cell13211210
exocrine cell39
pancreatic ductal cell13494
tissue
islet of Langerhans289762011
liver67121
body of pancreas33422
spleen20121
pancreas1621
stem cell
hESC31
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