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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
Hi-C
Assay category
19
3D chromatin structure
Date released
8
March, 2020
3
October, 2022
2
August, 2021
2
November, 2019
2
October, 2019
1
March, 2019
1
March, 2023
Available data
2586
bam
2347
bigWig
1375
tsv
1219
bed narrowPeak
1140
fastq
881
bigBed narrowPeak
292
bed broadPeak
270
bigBed broadPeak
237
bed bed3+
158
txt
153
zippedFastqFolder
152
tagAlign
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
vcf
Organism
19
Homo sapiens
Biosample type
11
tissue
6
primary cell
in vitro differentiated cells
2
cell line
Organ
7
pancreas
6
epithelium
3
blood vessel
3
heart
3
vasculature
2
liver
2
musculature of body
2
vein
1
kidney
Project
15
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
18
hg19
1
GRCh38
Lab
12
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
4
audit script error
1
inconsistent ontology term
biosample_type!
in vitro differentiated cells
files.file_type!
ibed
month_released!
May, 2021
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
19 results
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Hi-C
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 4 more…
primary cell
endothelial cell of umbilical vein
2
chondrocytes
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
1
HepG2
1
See all biosamples
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