Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
Hi-C
Assay category
15
3D chromatin structure
Date released
6
March, 2020
3
October, 2022
2
November, 2019
1
August, 2021
1
March, 2019
1
March, 2023
1
October, 2019
Available data
2891
bam
2687
bigWig
1430
bed narrowPeak
1302
tsv
1217
fastq
931
bigBed narrowPeak
352
tagAlign
291
bed broadPeak
254
bigBed broadPeak
218
bed bed3+
153
zippedFastqFolder
101
txt
28
bed bedMethyl
28
bigBed bedMethyl
15
hic
13
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
15
Homo sapiens
Biosample type
7
tissue
6
primary cell
in vitro differentiated cells
2
cell line
Organ
7
pancreas
6
epithelium
3
blood vessel
heart
3
vasculature
2
liver
2
musculature of body
2
vein
Project
11
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
14
hg19
1
GRCh38
Lab
9
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
ITG
Katalin Susztak, Upenn
Audit category:
4
audit script error
1
inconsistent ontology term
biosample_type!
in vitro differentiated cells
lab.title!
Katalin Susztak, Upenn
Maike Sander, UCSD
organ_slims!
heart
BIOSAMPLE
ASSAY
15 results
search-icon
table-tab-icon
Clear Filters
Hi-C
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
liver
1
pancreas
1
primary cell
endothelial cell of umbilical vein
2
chondrocytes
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
1
HepG2
1
Download