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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
Hi-C
Assay category
17
3D chromatin structure
Date released
8
March, 2020
3
October, 2022
2
August, 2021
2
November, 2019
October, 2019
1
March, 2019
1
March, 2023
Available data
2572
bam
2447
bigWig
1471
bed narrowPeak
1265
tsv
1217
fastq
957
bigBed narrowPeak
312
bed broadPeak
275
bigBed broadPeak
259
tagAlign
240
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
17
hic
15
bedpe bed3+
8
csv
7
bed bed3
4
hdf5
3
cool
3
tar
1
bedpe
1
vcf
Organism
17
Homo sapiens
Biosample type
10
tissue
5
primary cell
2
cell line
in vitro differentiated cells
Organ
7
pancreas
5
epithelium
2
blood vessel
2
heart
2
liver
2
musculature of body
2
vasculature
1
kidney
1
vein
Project
13
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
16
hg19
1
GRCh38
Lab
10
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
3
audit script error
1
inconsistent ontology term
biosample_type!
in vitro differentiated cells
month_released!
May, 2020
October, 2019
organ_slims!
small intestine
BIOSAMPLE
ASSAY
17 results
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Hi-C
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart left ventricle
1
heart right ventricle
1
+ See 3 more…
primary cell
chondrocytes
1
endothelial cell of umbilical vein
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
1
HepG2
1
See all biosamples
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