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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
281
ChIP-seq
Assay category
281
DNA binding
Target of assay
218
histone
218
histone modification
136
narrow histone mark
82
broad histone mark
58
control
5
transcription factor
Date released
84
May, 2021
54
August, 2017
50
May, 2020
49
October, 2019
24
November, 2017
8
February, 2021
8
October, 2017
4
August, 2021
Available data
3068
bam
2877
bigWig
1652
bed narrowPeak
1469
tsv
1184
fastq
bigBed narrowPeak
358
tagAlign
316
bed broadPeak
279
bigBed broadPeak
248
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
280
Homo sapiens
Biosample type
181
tissue
89
primary cell
in vitro differentiated cells
11
cell line
Organ
77
liver
67
brain
15
musculature of body
10
pancreas
8
adipose tissue
8
connective tissue
6
artery
6
blood vessel
6
heart
6
vasculature
4
epithelium
1
pituitary gland
Project
197
AMP
84
T1D
Genome assembly (visualization)
184
hg19
151
GRCh38
Lab
197
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
biosample_type!
in vitro differentiated cells
files.file_type!
bigBed narrowPeak
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
281 results
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Clear Filters
ChIP-seq
tissue
liver
70
skeletal muscle tissue
15
islet of Langerhans
9
brain
8
cingulate gyrus
8
+ See 43 more…
primary cell
monocyte
84
hepatocyte
4
skeletal muscle myoblast
1
cell line
smooth muscle cell of the coronary artery
6
HepG2
3
iPSC derived cell line
2
See all biosamples
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