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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
240
ChIP-seq
Assay category
240
DNA binding
Target of assay
196
histone
196
histone modification
108
narrow histone mark
88
broad histone mark
39
control
5
transcription factor
Date released
84
May, 2021
71
August, 2017
50
May, 2020
12
November, 2017
11
October, 2019
8
February, 2021
4
August, 2021
Available data
2855
bam
2685
bigWig
1482
bed narrowPeak
1440
tsv
1193
fastq
898
bigBed narrowPeak
274
bed broadPeak
246
bigBed broadPeak
240
tagAlign
213
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
6
bed bed3
4
tar
3
cool
2
hdf5
1
bedpe
1
vcf
Organism
233
Homo sapiens
Biosample type
120
tissue
100
primary cell
in vitro differentiated cells
20
cell line
Organ
brain
86
liver
16
pancreas
15
musculature of body
8
adipose tissue
8
connective tissue
6
artery
6
blood vessel
6
heart
6
vasculature
4
epithelium
1
pituitary gland
Project
156
AMP
84
T1D
Genome assembly (visualization)
178
hg19
146
GRCh38
Lab
156
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
11
inconsistent control read length
2
inconsistent assembly
biosample_type!
in vitro differentiated cells
month_released!
August, 2018
organ_slims!
brain
BIOSAMPLE
ASSAY
240 results
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Clear Filters
ChIP-seq
tissue
liver
70
skeletal muscle tissue
15
islet of Langerhans
9
subcutaneous abdominal adipose tissue
8
pancreas
7
+ See 9 more…
primary cell
monocyte
84
skeletal muscle myoblast
12
hepatocyte
4
cell line
HepG2
12
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
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