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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
353
ChIP-seq
Assay category
353
DNA binding
Target of assay
295
histone
295
histone modification
162
narrow histone mark
133
broad histone mark
58
control
transcription factor
Date released
84
May, 2021
78
November, 2017
71
August, 2017
50
May, 2020
49
October, 2019
14
October, 2017
4
August, 2021
3
February, 2021
Available data
2650
bam
2448
bigWig
1466
tsv
1248
bed narrowPeak
793
fastq
622
bigBed narrowPeak
353
tagAlign
272
bed broadPeak
235
bed bed3+
235
bigBed broadPeak
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
3
cool
1
bedpe
1
tagAlign bed3+
1
tar
1
vcf
Organism
346
Homo sapiens
Biosample type
238
tissue
100
primary cell
in vitro differentiated cells
15
cell line
Organ
118
brain
86
liver
16
pancreas
15
musculature of body
8
adipose tissue
8
connective tissue
4
epithelium
2
artery
2
blood vessel
2
heart
2
vasculature
1
pituitary gland
Project
269
AMP
84
T1D
Genome assembly (visualization)
223
GRCh38
216
hg19
Lab
269
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
4
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
biosample_type!
in vitro differentiated cells
month_released!
August, 2018
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
353 results
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Clear Filters
ChIP-seq
tissue
liver
70
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
skeletal muscle tissue
15
+ See 43 more…
primary cell
monocyte
84
skeletal muscle myoblast
12
hepatocyte
4
cell line
HepG2
12
smooth muscle cell of the coronary artery
2
iPSC derived cell line
1
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