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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
305
ChIP-seq
Assay category
305
DNA binding
Target of assay
252
histone
252
histone modification
132
broad histone mark
120
narrow histone mark
48
control
5
transcription factor
Date released
84
May, 2021
78
November, 2017
71
August, 2017
50
May, 2020
October, 2019
14
October, 2017
8
February, 2021
Available data
2583
bam
2440
bigWig
1375
bed narrowPeak
1304
tsv
967
fastq
909
bigBed narrowPeak
305
tagAlign
294
bed broadPeak
257
bigBed broadPeak
221
bed bed3+
158
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
12
hic
10
bedpe bed3+
7
bed bed3
7
csv
3
tar
2
hdf5
1
bedpe
1
vcf
Organism
298
Homo sapiens
Biosample type
189
tissue
96
primary cell
in vitro differentiated cells
20
cell line
Organ
86
liver
80
brain
16
pancreas
15
musculature of body
8
adipose tissue
8
connective tissue
6
artery
6
blood vessel
6
heart
6
vasculature
epithelium
Project
221
AMP
84
T1D
Genome assembly (visualization)
185
GRCh38
178
hg19
Lab
221
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
4
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
biosample_type!
in vitro differentiated cells
month_released!
October, 2019
September, 2018
organ_slims!
epithelium
BIOSAMPLE
ASSAY
305 results
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ChIP-seq
tissue
liver
70
caudate nucleus
15
skeletal muscle tissue
15
substantia nigra
15
brain
14
+ See 6 more…
primary cell
monocyte
84
skeletal muscle myoblast
12
cell line
HepG2
12
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
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