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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
221
ChIP-seq
Assay category
221
DNA binding
Target of assay
288
histone
288
histone modification
159
narrow histone mark
broad histone mark
57
control
5
transcription factor
Date released
50
May, 2020
49
October, 2019
40
May, 2021
37
November, 2017
30
August, 2017
8
February, 2021
4
October, 2017
3
August, 2021
Available data
2263
bam
2040
bigWig
1260
bed narrowPeak
1042
tsv
1031
fastq
766
bigBed narrowPeak
282
bed broadPeak
266
bigBed broadPeak
234
bed bed3+
221
tagAlign
158
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
19
hic
16
bedpe bed3+
7
bed bed3
7
csv
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
218
Homo sapiens
Biosample type
158
tissue
49
primary cell
in vitro differentiated cells
14
cell line
Organ
73
brain
68
liver
8
pancreas
7
musculature of body
6
artery
6
blood vessel
6
heart
6
vasculature
adipose tissue
4
connective tissue
3
epithelium
1
pituitary gland
Project
181
AMP
40
T1D
Genome assembly (visualization)
140
hg19
132
GRCh38
Lab
181
AMP-T2D consortium
40
Kyle Gaulton, UCSD
Audit category:
1
missing controlled_by
Audit category:
5
inconsistent control read length
biosample_type!
in vitro differentiated cells
month_released!
September, 2018
organ_slims!
adipose tissue
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
221 results
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Clear Filters
ChIP-seq
tissue
liver
59
substantia nigra
8
caudate nucleus
7
cingulate gyrus
7
layer of hippocampus
7
+ See 42 more…
primary cell
monocyte
40
skeletal muscle myoblast
6
hepatocyte
3
cell line
HepG2
6
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
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