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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1188total RNA-seq
  • 209single cell RNA-seq
  • 29pCHi-C
  • 18small RNA-seq
  • 14ATAC-seq
  • 6WGBS
  • 3snDrop-seq
  • 2RNA microarray
Assay category
  • 1415Transcription
  • 14DNA accessibility
  • 6DNA methylation
Target of assay
  • 3control
Date released
  • 537February, 2021
  • 189May, 2020
  • 164July, 2018
  • 116August, 2021
  • 94May, 2021
  • 89August, 2017
  • 65July, 2019
  • 49April, 2018
  • 41March, 2020
  • 26September, 2018
  • 25February, 2020
  • 20November, 2019
  • 16February, 2023
  • 14October, 2019
  • 7December, 2019
  • 5January, 2019
  • 4November, 2020
  • 3August, 2018
  • 3June, 2018
  • 2October, 2018
Available data
  • 3101bam
  • 2910bigWig
  • 1685bed narrowPeak
  • 1469tsv
  • 1217fastq
  • 1025bigBed narrowPeak
  • 358tagAlign
  • 321bed broadPeak
  • 284bigBed broadPeak
  • 248bed bed3+
  • 158txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 19hic
  • 16bedpe bed3+
  • 8csv
  • 7bed bed3
  • 5hdf5
  • 4tar
  • 3cool
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1469Homo sapiens
Biosample type
  • 1076tissue
  • 270primary cell
  • in vitro differentiated cells
  • 119cell line
  • 4stem cell
Organ
  • 473connective tissue
  • 417pancreas
  • 401adipose tissue
  • 174liver
  • 167heart
  • 154epithelium
  • 68blood vessel
  • 68vasculature
  • 58artery
  • 58bone element
  • 26brain
  • 24kidney
  • 9musculature of body
  • 8embryo
  • 7limb
  • 5eye
  • 5nerve
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1ovary
  • 1pericardium
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 1365AMP
  • 98T1D
  • 6HPAP
Genome assembly (visualization)
  • 1275hg19
  • 1273GRCh38
Lab
  • 1357AMP-T2D consortium
  • 96Kyle Gaulton, UCSD
  • 10Bing Ren, UCSD
  • 6Klaus Kaestner, Upenn
Audit category:
  • 60inconsistent ontology term
  • 7audit script error
biosample_type!
  • in vitro differentiated cells
BIOSAMPLE
ASSAY

1469 results

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Clear Filters
total RNA-seq
single cell RNA-seq
pCHi-C
small RNA-seq
ATAC-seq
WGBS
snDrop-seq
RNA microarray
tissue
adipose tissue3811
islet of Langerhans26161
liver14711
bone tissue58
heart left ventricle3181
primary cell
monocyte53
pancreatic alpha cell10126
pancreatic beta cell1012
pancreatic acinar cell412
pancreatic ductal cell410
cell line
smooth muscle cell of the coronary artery52
EndoC_BH1331
HepG2141
H1-hESC8
RCC 7860 vector11
stem cell
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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