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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 104ChIP-seq
  • 4RRBS
  • 1DNase-seq
Assay category
  • 104DNA binding
  • 4DNA methylation
  • 1DNA accessibility
Target of assay
  • 52transcription factor
  • 31histone
  • 31histone modification
  • 21control
  • 16broad histone mark
  • 15narrow histone mark
  • 7RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 59November, 2017
  • 43August, 2017
  • 3December, 2017
  • 2November, 2018
  • 1January, 2019
  • 1October, 2017
Available data
  • 109fastq
  • 104bam
  • 88bigWig
  • 78bed narrowPeak
  • 64bigBed narrowPeak
  • 53bed broadPeak
  • 53bigBed broadPeak
  • 16tagAlign
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3bed bed3+
Organism
  • 109Homo sapiens
Biosample type
  • 62cell line
  • 37primary cell
  • in vitro differentiated cells
  • 10tissue
Organ
  • 65liver
  • 29pancreas
  • 26epithelium
  • 2musculature of body
  • 1blood
  • 1bodily fluid
  • 1brain
Project
  • 109AMP
Genome assembly (visualization)
  • 92hg19
  • 72GRCh38
Lab
  • 109AMP-T2D consortium
Audit category:
  • 3missing controlled_by
Audit category:
  • 12inconsistent control read length
biosample_type!
  • in vitro differentiated cells
BIOSAMPLE
ASSAY

109 results

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Clear Filters
ChIP-seq
RRBS
DNase-seq
cell line
HepG261
GM128781
primary cell
pancreatic alpha cell13
pancreatic beta cell13
skeletal muscle myoblast911
tissue
liver31
islet of Langerhans3
skeletal muscle tissue2
brain1
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