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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
374
ChIP-seq
122
total RNA-seq
27
single cell RNA-seq
18
ATAC-seq
3
DNase-seq
1
Hi-C
Assay category
374
DNA binding
149
Transcription
21
DNA accessibility
1
3D chromatin structure
Target of assay
228
transcription factor
82
recombinant protein
75
control
69
histone
69
histone modification
38
broad histone mark
31
narrow histone mark
26
RNA binding protein
9
chromatin remodeller
3
other context
3
other post-translational modification
Date released
173
November, 2017
147
August, 2017
72
September, 2018
50
November, 2018
35
December, 2017
25
July, 2018
17
October, 2018
12
January, 2019
8
October, 2017
4
December, 2018
1
August, 2018
1
June, 2018
Available data
545
fastq
543
bam
466
bigWig
281
bed narrowPeak
243
bigBed narrowPeak
149
tsv
16
bed broadPeak
12
bed bed3+
11
tagAlign
9
bigBed broadPeak
Organism
539
Homo sapiens
Biosample type
227
cell line
203
tissue
115
primary cell
in vitro differentiated cells
Organ
262
liver
219
pancreas
78
epithelium
29
connective tissue
27
adipose tissue
16
blood
16
bodily fluid
6
spleen
5
brain
Project
545
AMP
Genome assembly (visualization)
463
hg19
460
GRCh38
Lab
544
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
7
inconsistent ontology term
Audit category:
63
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
545 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
cell line
HepG2
205
5
1
GM12878
16
tissue
islet of Langerhans
6
89
1
liver
50
1
pancreas
13
white adipose tissue
12
subcutaneous adipose tissue
9
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primary cell
pancreatic ductal cell
13
4
2
4
pancreatic endocrine cell
23
pancreatic acinar cell
8
4
4
3
pancreatic beta cell
10
2
4
pancreatic alpha cell
10
1
3
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