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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 88ChIP-seq
  • 37single cell RNA-seq
  • 6WGBS
  • 2ATAC-seq
  • 2DNase-seq
  • 1GRO-seq
Assay category
  • 88DNA binding
  • 37Transcription
  • 6DNA methylation
  • 4DNA accessibility
Target of assay
  • 42transcription factor
  • 33RNA binding protein
  • 33histone
  • 33histone modification
  • 19broad histone mark
  • 19chromatin remodeller
  • 14narrow histone mark
  • 12control
Date released
  • 24November, 2018
  • 22November, 2017
  • 21April, 2018
  • 21October, 2018
  • 12January, 2019
  • 11July, 2018
  • 9December, 2017
  • 7August, 2017
  • 2December, 2018
  • 1August, 2018
  • 1January, 2018
  • 1June, 2018
  • 1March, 2019
  • 1October, 2017
  • 1September, 2018
  • 1September, 2020
Available data
  • 135fastq
  • 130bam
  • 117bigWig
  • 77bed narrowPeak
  • 74bigBed narrowPeak
  • 34tsv
  • 5bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3bed broadPeak
  • 2bigBed broadPeak
  • 2csv
  • 1zippedFastqFolder
Organism
  • 136Homo sapiens
Biosample type
  • in vitro differentiated cells
  • 48cell line
  • 47tissue
  • 37primary cell
  • 4stem cell
Organ
  • 51pancreas
  • 47liver
  • 26epithelium
  • 10blood
  • 10bodily fluid
  • 7spleen
  • 4adipose tissue
  • 4connective tissue
  • 2brain
Project
  • 135AMP
  • 1HPAP
Genome assembly (visualization)
  • 115GRCh38
  • 111hg19
  • 1hg18
Lab
  • 134AMP-T2D consortium
  • 1Klaus Kaestner, Upenn
  • 1Mark McCarthy, Oxford
Audit category:
  • 1inconsistent control
Audit category:
  • 7missing controlled_by
Audit category:
  • 14inconsistent control read length
  • 8inconsistent control run_type
biosample_type!
  • in vitro differentiated cells
BIOSAMPLE
ASSAY

136 results

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Clear Filters
ChIP-seq
single cell RNA-seq
WGBS
ATAC-seq
DNase-seq
GRO-seq
cell line
HepG238
GM1287810
tissue
body of pancreas20
spleen7
right lobe of liver6
adipose tissue3
islet of Langerhans21
primary cell
pancreatic alpha cell6
pancreatic beta cell6
pancreatic cell6
pancreatic delta cell5
pancreatic polypeptide-secreting cell5
stem cell
hESC31
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