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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
37
single cell RNA-seq
6
WGBS
2
ATAC-seq
2
DNase-seq
1
GRO-seq
Assay category
88
DNA binding
37
Transcription
6
DNA methylation
4
DNA accessibility
Target of assay
42
transcription factor
33
RNA binding protein
33
histone
33
histone modification
19
broad histone mark
19
chromatin remodeller
14
narrow histone mark
12
control
Date released
24
November, 2018
22
November, 2017
21
April, 2018
21
October, 2018
12
January, 2019
11
July, 2018
9
December, 2017
7
August, 2017
2
December, 2018
1
August, 2018
1
January, 2018
1
June, 2018
1
March, 2019
1
October, 2017
1
September, 2018
1
September, 2020
Available data
135
fastq
130
bam
117
bigWig
77
bed narrowPeak
74
bigBed narrowPeak
34
tsv
5
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
3
bed broadPeak
2
bigBed broadPeak
2
csv
1
zippedFastqFolder
Organism
136
Homo sapiens
Biosample type
in vitro differentiated cells
48
cell line
47
tissue
37
primary cell
4
stem cell
Organ
51
pancreas
47
liver
26
epithelium
10
blood
10
bodily fluid
7
spleen
4
adipose tissue
4
connective tissue
2
brain
Project
135
AMP
1
HPAP
Genome assembly (visualization)
115
GRCh38
111
hg19
1
hg18
Lab
134
AMP-T2D consortium
1
Klaus Kaestner, Upenn
1
Mark McCarthy, Oxford
Audit category:
1
inconsistent control
Audit category:
7
missing controlled_by
Audit category:
14
inconsistent control read length
8
inconsistent control run_type
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
136 results
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ChIP-seq
single cell RNA-seq
WGBS
ATAC-seq
DNase-seq
GRO-seq
cell line
HepG2
38
GM12878
10
tissue
body of pancreas
20
spleen
7
right lobe of liver
6
adipose tissue
3
islet of Langerhans
2
1
+ See 5 more…
primary cell
pancreatic alpha cell
6
pancreatic beta cell
6
pancreatic cell
6
pancreatic delta cell
5
pancreatic polypeptide-secreting cell
5
+ See 4 more…
stem cell
hESC
3
1
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