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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1540
ChIP-seq
1369
total RNA-seq
463
ATAC-seq
339
single cell RNA-seq
211
DNase-seq
87
RNA microarray
85
snATAC-seq
64
WGBS
52
pCHi-C
30
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
1730
Transcription
1540
DNA binding
764
DNA accessibility
86
DNA methylation
30
3D chromatin structure
1
DNA sequencing
Target of assay
905
histone modification
904
histone
459
narrow histone mark
445
broad histone mark
361
transcription factor
280
control
89
recombinant protein
85
RNA binding protein
30
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
683
February, 2021
367
November, 2017
341
May, 2020
330
August, 2017
306
October, 2019
277
August, 2021
267
May, 2021
218
June, 2019
189
February, 2023
176
May, 2022
160
July, 2018
120
May, 2019
108
July, 2019
80
April, 2019
73
September, 2018
71
November, 2018
56
March, 2020
56
November, 2019
49
October, 2018
47
December, 2017
47
September, 2023
41
September, 2020
40
May, 2024
32
April, 2018
25
February, 2020
22
January, 2019
19
April, 2020
17
October, 2017
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
December, 2018
2
June, 2018
1
August, 2022
1
July, 2025
Available data
2907
bam
2766
bigWig
1559
bed narrowPeak
1438
tsv
999
fastq
923
bigBed narrowPeak
358
tagAlign
321
bed broadPeak
284
bigBed broadPeak
247
bed bed3+
152
txt
151
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
tbi
1
vcf
Organism
4302
Homo sapiens
Biosample type
2696
tissue
1038
primary cell
574
cell line
in vitro differentiated cells
10
stem cell
Organ
861
pancreas
727
liver
561
connective tissue
464
adipose tissue
460
epithelium
392
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
97
musculature of body
61
eye
43
nerve
24
blood
24
bodily fluid
22
vein
20
lung
18
ureter
17
spleen
16
skeleton
8
embryo
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
3703
AMP
300
HPAP
244
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
2757
hg19
2719
GRCh38
1
hg18
Lab
3400
AMP-T2D consortium
300
Klaus Kaestner, Upenn
272
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
2
Stephen Parker, UMich
1
ITG
1
Maike Sander, UCSD
Audit category:
238
inconsistent ontology term
40
audit script error
28
inconsistent control
1
inconsistent replicate
Audit category:
76
missing controlled_by
Audit category:
39
inconsistent control read length
9
inconsistent control run_type
4
inconsistent assembly
biosample_type!
in vitro differentiated cells
files.read_length!
100
BIOSAMPLE
ASSAY
4318 results
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