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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
206
ChIP-seq
10
DNase-seq
4
RRBS
Assay category
206
DNA binding
10
DNA accessibility
4
DNA methylation
Target of assay
96
transcription factor
69
histone
69
histone modification
41
control
38
broad histone mark
31
narrow histone mark
22
RNA binding protein
17
chromatin remodeller
2
other context
2
other post-translational modification
Date released
114
November, 2017
69
August, 2017
16
November, 2018
9
October, 2017
6
September, 2017
5
December, 2017
1
January, 2019
Available data
220
fastq
214
bam
185
bigWig
170
bed narrowPeak
147
bigBed narrowPeak
92
bed broadPeak
83
bigBed broadPeak
39
tagAlign
25
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
Organism
213
Homo sapiens
Biosample type
113
cell line
57
tissue
48
primary cell
in vitro differentiated cells
2
stem cell
Organ
122
liver
52
pancreas
28
epithelium
20
brain
6
vasculature
3
adipose tissue
3
blood vessel
3
connective tissue
2
musculature of body
1
blood
1
bodily fluid
1
spleen
Project
220
AMP
Genome assembly (visualization)
192
hg19
156
GRCh38
Lab
220
AMP-T2D consortium
Audit category:
14
missing controlled_by
Audit category:
26
inconsistent control read length
9
inconsistent control run_type
3
inconsistent assembly
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
220 results
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Clear Filters
ChIP-seq
DNase-seq
RRBS
cell line
HepG2
112
GM12878
1
tissue
islet of Langerhans
18
brain
9
2
pancreas
10
liver
6
2
1
adipose tissue
2
+ See 5 more…
primary cell
skeletal muscle myoblast
15
1
1
pancreatic alpha cell
11
pancreatic beta cell
11
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
+ See 1 more…
stem cell
hESC
2
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