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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 206ChIP-seq
  • 10DNase-seq
  • 4RRBS
Assay category
  • 206DNA binding
  • 10DNA accessibility
  • 4DNA methylation
Target of assay
  • 96transcription factor
  • 69histone
  • 69histone modification
  • 41control
  • 38broad histone mark
  • 31narrow histone mark
  • 22RNA binding protein
  • 17chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 114November, 2017
  • 69August, 2017
  • 16November, 2018
  • 9October, 2017
  • 6September, 2017
  • 5December, 2017
  • 1January, 2019
Available data
  • 220fastq
  • 214bam
  • 185bigWig
  • 170bed narrowPeak
  • 147bigBed narrowPeak
  • 92bed broadPeak
  • 83bigBed broadPeak
  • 39tagAlign
  • 25bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
Organism
  • 213Homo sapiens
Biosample type
  • 113cell line
  • 57tissue
  • 48primary cell
  • in vitro differentiated cells
  • 2stem cell
Organ
  • 122liver
  • 52pancreas
  • 28epithelium
  • 20brain
  • 6vasculature
  • 3adipose tissue
  • 3blood vessel
  • 3connective tissue
  • 2musculature of body
  • 1blood
  • 1bodily fluid
  • 1spleen
Project
  • 220AMP
Genome assembly (visualization)
  • 192hg19
  • 156GRCh38
Lab
  • 220AMP-T2D consortium
Audit category:
  • 14missing controlled_by
Audit category:
  • 26inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
biosample_type!
  • in vitro differentiated cells
BIOSAMPLE
ASSAY

220 results

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Clear Filters
ChIP-seq
DNase-seq
RRBS
cell line
HepG2112
GM128781
tissue
islet of Langerhans18
brain92
pancreas10
liver621
adipose tissue2
primary cell
skeletal muscle myoblast1511
pancreatic alpha cell11
pancreatic beta cell11
astrocyte of the cerebellum3
brain microvascular endothelial cell3
stem cell
hESC2
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