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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
ChIP-seq
49
ATAC-seq
16
snATAC-seq
5
total RNA-seq
1
FAIRE-seq
1
GRO-seq
1
Hi-C
1
single cell RNA-seq
Assay category
114
DNA binding
66
DNA accessibility
6
Transcription
1
3D chromatin structure
Target of assay
67
transcription factor
36
control
12
recombinant protein
11
histone
11
histone modification
8
broad histone mark
3
chromatin remodeller
3
narrow histone mark
1
RNA binding protein
Date released
53
November, 2017
39
May, 2022
37
December, 2017
18
August, 2017
16
February, 2021
10
January, 2019
5
November, 2018
5
September, 2017
1
December, 2018
1
January, 2018
1
March, 2019
1
October, 2017
1
September, 2020
Available data
148
fastq
130
bam
94
bigWig
80
bed narrowPeak
76
bigBed narrowPeak
40
zippedFastqFolder
5
bed broadPeak
5
tsv
4
bed bed3+
4
bigBed broadPeak
Organism
188
Homo sapiens
Biosample type
64
cell line
64
primary cell
57
tissue
in vitro differentiated cells
3
stem cell
Organ
105
liver
55
pancreas
47
epithelium
5
blood
5
bodily fluid
2
adipose tissue
2
connective tissue
1
brain
Project
132
AMP
56
HPAP
Genome assembly (visualization)
92
hg19
87
GRCh38
1
hg18
Lab
131
AMP-T2D consortium
56
Klaus Kaestner, Upenn
1
Mark McCarthy, Oxford
Audit category:
27
inconsistent control
16
audit script error
Audit category:
2
missing controlled_by
Audit category:
8
inconsistent control read length
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
188 results
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Clear Filters
ChIP-seq
ATAC-seq
snATAC-seq
total RNA-seq
FAIRE-seq
GRO-seq
Hi-C
single cell RNA-seq
cell line
HepG2
53
5
1
GM12878
5
primary cell
pancreatic alpha cell
25
Langerhans cell
16
1
pancreatic beta cell
16
pancreatic acinar cell
6
tissue
liver
46
pancreas
4
1
islet of Langerhans
2
1
white adipose tissue
2
cerebellum (Hemisphere)
1
stem cell
hESC
2
1
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