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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 114ChIP-seq
  • 49ATAC-seq
  • 16snATAC-seq
  • 5total RNA-seq
  • 1FAIRE-seq
  • 1GRO-seq
  • 1Hi-C
  • 1single cell RNA-seq
Assay category
  • 114DNA binding
  • 66DNA accessibility
  • 6Transcription
  • 13D chromatin structure
Target of assay
  • 67transcription factor
  • 36control
  • 12recombinant protein
  • 11histone
  • 11histone modification
  • 8broad histone mark
  • 3chromatin remodeller
  • 3narrow histone mark
  • 1RNA binding protein
Date released
  • 53November, 2017
  • 39May, 2022
  • 37December, 2017
  • 18August, 2017
  • 16February, 2021
  • 10January, 2019
  • 5November, 2018
  • 5September, 2017
  • 1December, 2018
  • 1January, 2018
  • 1March, 2019
  • 1October, 2017
  • 1September, 2020
Available data
  • 148fastq
  • 130bam
  • 94bigWig
  • 80bed narrowPeak
  • 76bigBed narrowPeak
  • 40zippedFastqFolder
  • 5bed broadPeak
  • 5tsv
  • 4bed bed3+
  • 4bigBed broadPeak
Organism
  • 188Homo sapiens
Biosample type
  • 64cell line
  • 64primary cell
  • 57tissue
  • in vitro differentiated cells
  • 3stem cell
Organ
  • 105liver
  • 55pancreas
  • 47epithelium
  • 5blood
  • 5bodily fluid
  • 2adipose tissue
  • 2connective tissue
  • 1brain
Project
  • 132AMP
  • 56HPAP
Genome assembly (visualization)
  • 92hg19
  • 87GRCh38
  • 1hg18
Lab
  • 131AMP-T2D consortium
  • 56Klaus Kaestner, Upenn
  • 1Mark McCarthy, Oxford
Audit category:
  • 27inconsistent control
  • 16audit script error
Audit category:
  • 2missing controlled_by
Audit category:
  • 8inconsistent control read length
biosample_type!
  • in vitro differentiated cells
BIOSAMPLE
ASSAY

188 results

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Clear Filters
ChIP-seq
ATAC-seq
snATAC-seq
total RNA-seq
FAIRE-seq
GRO-seq
Hi-C
single cell RNA-seq
cell line
HepG25351
GM128785
primary cell
pancreatic alpha cell25
Langerhans cell161
pancreatic beta cell16
pancreatic acinar cell6
tissue
liver46
pancreas41
islet of Langerhans21
white adipose tissue2
cerebellum (Hemisphere)1
stem cell
hESC21
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