Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 147ChIP-seq
  • 10ATAC-seq
  • 1single cell RNA-seq
Assay category
  • 147DNA binding
  • 10DNA accessibility
  • 1Transcription
Target of assay
  • 97transcription factor
  • 70recombinant protein
  • 30histone
  • 30histone modification
  • 20control
  • 18broad histone mark
  • 12narrow histone mark
  • 10chromatin remodeller
  • 6RNA binding protein
  • 3other context
  • 3other post-translational modification
Date released
  • 71November, 2017
  • 29October, 2018
  • 26November, 2018
  • 12January, 2019
  • 7August, 2020
  • 6December, 2017
  • 4September, 2020
  • 2December, 2018
  • 1August, 2017
Available data
  • 157fastq
  • 147bam
  • 136bigWig
  • 126bed narrowPeak
  • 126bigBed narrowPeak
  • 1zippedFastqFolder
Organism
  • 158Homo sapiens
Biosample type
  • 98cell line
  • 48tissue
  • in vitro differentiated cells
  • 12primary cell
Organ
  • 94liver
  • 30pancreas
  • 13spleen
  • 10blood
  • 10bodily fluid
  • 10epithelium
  • 9adipose tissue
  • 9connective tissue
Project
  • 147AMP
  • 11HPAP
Genome assembly (visualization)
  • 136GRCh38
  • 123hg19
Lab
  • 147AMP-T2D consortium
  • 11Klaus Kaestner, Upenn
Audit category:
  • 1inconsistent control
Audit category:
  • 2missing controlled_by
Audit category:
  • 4inconsistent control read length
  • 1inconsistent assembly
  • 1inconsistent control run_type
biosample_type!
  • in vitro differentiated cells
BIOSAMPLE
ASSAY

158 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
cell line
HepG288
GM1287810
tissue
body of pancreas20
spleen13
right lobe of liver6
omental fat pad5
subcutaneous adipose tissue4
primary cell
pancreatic alpha cell7
pancreatic beta cell3
Langerhans cell1
skeletal muscle myoblast1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego