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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
147
ChIP-seq
10
ATAC-seq
1
single cell RNA-seq
Assay category
147
DNA binding
10
DNA accessibility
1
Transcription
Target of assay
97
transcription factor
70
recombinant protein
30
histone
30
histone modification
20
control
18
broad histone mark
12
narrow histone mark
10
chromatin remodeller
6
RNA binding protein
3
other context
3
other post-translational modification
Date released
71
November, 2017
29
October, 2018
26
November, 2018
12
January, 2019
7
August, 2020
6
December, 2017
4
September, 2020
2
December, 2018
1
August, 2017
Available data
157
fastq
147
bam
136
bigWig
126
bed narrowPeak
126
bigBed narrowPeak
1
zippedFastqFolder
Organism
158
Homo sapiens
Biosample type
98
cell line
48
tissue
in vitro differentiated cells
12
primary cell
Organ
94
liver
30
pancreas
13
spleen
10
blood
10
bodily fluid
10
epithelium
9
adipose tissue
9
connective tissue
Project
147
AMP
11
HPAP
Genome assembly (visualization)
136
GRCh38
123
hg19
Lab
147
AMP-T2D consortium
11
Klaus Kaestner, Upenn
Audit category:
1
inconsistent control
Audit category:
2
missing controlled_by
Audit category:
4
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
158 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
cell line
HepG2
88
GM12878
10
tissue
body of pancreas
20
spleen
13
right lobe of liver
6
omental fat pad
5
subcutaneous adipose tissue
4
primary cell
pancreatic alpha cell
7
pancreatic beta cell
3
Langerhans cell
1
skeletal muscle myoblast
1
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