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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
DNase-seq
106
single cell RNA-seq
82
ChIP-seq
25
total RNA-seq
16
ATAC-seq
10
small RNA-seq
2
Hi-C
2
WGBS
2
snATAC-seq
Assay category
159
DNA accessibility
141
Transcription
82
DNA binding
2
3D chromatin structure
2
DNA methylation
Target of assay
68
histone
68
histone modification
46
broad histone mark
22
narrow histone mark
13
control
1
RNA binding protein
1
transcription factor
Date released
137
June, 2019
98
August, 2021
26
July, 2019
26
October, 2019
19
May, 2019
16
April, 2019
16
November, 2019
15
October, 2017
13
February, 2021
9
February, 2023
5
April, 2020
4
November, 2018
2
May, 2021
Available data
259
bam
236
bigWig
215
bed narrowPeak
176
bigBed narrowPeak
144
bed broadPeak
141
bed bed3+
141
bigBed broadPeak
133
tsv
14
tagAlign
13
fastq
9
txt
5
bed bed3
5
csv
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
Organism
386
Homo sapiens
Biosample type
361
tissue
in vitro differentiated cells
16
cell line
9
primary cell
Organ
133
heart
89
kidney
46
limb
44
brain
42
musculature of body
20
epithelium
18
ureter
17
pancreas
16
bone element
16
skeleton
11
liver
7
blood vessel
7
vasculature
5
lung
3
connective tissue
3
eye
2
artery
1
pericardium
Project
381
AMP
5
LungMap
Genome assembly (visualization)
247
hg19
246
GRCh38
Lab
380
AMP-T2D consortium
5
Xin Sun, UCSD
1
Kyle Gaulton, UCSD
Audit category:
19
inconsistent ontology term
5
audit script error
Audit category:
4
missing controlled_by
biosample_type!
in vitro differentiated cells
files.run_type!
unknown
BIOSAMPLE
ASSAY
386 results
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DNase-seq
single cell RNA-seq
ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
WGBS
snATAC-seq
tissue
brain
14
20
1
1
heart
16
14
3
1
1
1
kidney
13
5
11
muscle of leg
13
7
1
heart left ventricle
2
18
+ See 49 more…
cell line
EndoC_BH1
13
1
1
1
primary cell
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
cardiac fibroblast
1
embryonic stem cell
1
glomerular endothelial cell
1
+ See 4 more…
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