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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
163
ChIP-seq
130
total RNA-seq
99
ATAC-seq
85
single cell RNA-seq
52
WGBS
48
snATAC-seq
9
DNase-seq
1
Hi-C
Assay category
215
Transcription
163
DNA binding
156
DNA accessibility
52
DNA methylation
1
3D chromatin structure
Target of assay
109
transcription factor
41
control
21
RNA binding protein
11
chromatin remodeller
10
histone modification
9
histone
6
narrow histone mark
3
broad histone mark
3
other context
3
other post-translational modification
Date released
158
May, 2022
109
August, 2017
45
February, 2021
44
November, 2017
41
September, 2018
40
November, 2018
37
October, 2018
33
December, 2018
25
September, 2020
13
January, 2019
9
July, 2018
7
April, 2018
7
August, 2020
7
October, 2017
5
September, 2017
4
December, 2017
1
August, 2018
1
June, 2018
1
March, 2019
Available data
453
fastq
372
bam
317
bigWig
179
bed narrowPeak
146
bigBed narrowPeak
146
tsv
135
zippedFastqFolder
11
bed broadPeak
9
bigBed broadPeak
8
bed bed3+
6
txt
5
bed bedMethyl
5
bigBed bedMethyl
2
csv
Organism
587
Homo sapiens
Biosample type
281
primary cell
202
tissue
104
cell line
in vitro differentiated cells
Organ
295
pancreas
157
epithelium
80
liver
45
blood
45
bodily fluid
25
adipose tissue
25
connective tissue
17
spleen
1
brain
Project
376
AMP
211
HPAP
Genome assembly (visualization)
320
hg19
314
GRCh38
Lab
350
AMP-T2D consortium
211
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
audit script error
Audit category:
7
missing controlled_by
Audit category:
9
inconsistent control run_type
8
inconsistent control read length
1
inconsistent assembly
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
587 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
DNase-seq
Hi-C
primary cell
Langerhans cell
67
48
pancreatic alpha cell
10
35
3
31
pancreatic beta cell
10
23
2
16
pancreatic acinar cell
4
9
2
pancreatic ductal cell
4
4
2
+ See 4 more…
tissue
islet of Langerhans
97
20
body of pancreas
13
4
2
2
spleen
13
1
2
1
liver
13
2
subcutaneous adipose tissue
12
1
+ See 3 more…
cell line
HepG2
52
5
1
1
GM12878
45
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