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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
576
ChIP-seq
102
single cell RNA-seq
92
total RNA-seq
6
WGBS
4
RRBS
3
DNase-seq
2
FAIRE-seq
1
ATAC-seq
1
GRO-seq
Assay category
576
DNA binding
194
Transcription
10
DNA methylation
6
DNA accessibility
Target of assay
312
transcription factor
157
histone
157
histone modification
105
control
84
broad histone mark
82
recombinant protein
73
narrow histone mark
62
RNA binding protein
22
chromatin remodeller
2
other context
2
other post-translational modification
Date released
281
November, 2017
126
August, 2017
76
February, 2023
48
November, 2018
47
December, 2017
42
July, 2018
37
April, 2018
35
September, 2020
32
September, 2018
23
October, 2018
17
January, 2019
10
October, 2017
6
September, 2017
2
August, 2018
2
December, 2018
2
June, 2018
1
January, 2018
Available data
769
fastq
667
bam
576
bigWig
431
bed narrowPeak
368
bigBed narrowPeak
88
bed broadPeak
83
tsv
79
bigBed broadPeak
39
tagAlign
32
bed bed3+
19
zippedFastqFolder
8
bed bedMethyl
8
bigBed bedMethyl
3
tar
Organism
780
Homo sapiens
Biosample type
324
cell line
284
primary cell
175
tissue
in vitro differentiated cells
4
stem cell
Organ
371
liver
257
pancreas
162
epithelium
21
connective tissue
20
brain
18
adipose tissue
15
blood
15
bodily fluid
7
spleen
6
vasculature
3
blood vessel
2
musculature of body
Project
676
AMP
111
HPAP
Genome assembly (visualization)
574
hg19
522
GRCh38
1
hg18
Lab
676
AMP-T2D consortium
111
Klaus Kaestner, Upenn
Audit category:
28
inconsistent control
7
inconsistent ontology term
Audit category:
77
missing controlled_by
Audit category:
32
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
787 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
WGBS
RRBS
DNase-seq
FAIRE-seq
ATAC-seq
GRO-seq
cell line
HepG2
309
GM12878
15
primary cell
pancreatic alpha cell
13
10
42
exocrine cell
39
pancreatic beta cell
13
10
11
pancreatic endocrine cell
23
pancreatic ductal cell
13
7
+ See 18 more…
tissue
liver
54
1
1
islet of Langerhans
28
6
1
1
body of pancreas
20
pancreas
16
2
1
white adipose tissue
12
+ See 7 more…
stem cell
hESC
3
1
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