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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
total RNA-seq
92
ATAC-seq
10
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
single cell RNA-seq
Assay category
95
DNA accessibility
94
Transcription
Target of assay
5
control
5
nucleotide modification
Date released
689
February, 2021
406
November, 2017
343
August, 2017
341
May, 2020
306
October, 2019
267
May, 2021
241
August, 2021
218
June, 2019
200
May, 2022
189
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
56
March, 2020
56
November, 2019
51
December, 2017
49
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
3
March, 2019
1
August, 2022
Available data
76
fastq
65
bed narrowPeak
20
tsv
6
bam
5
bed bed3
5
bigWig
4
txt
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
204
Homo sapiens
Biosample type
99
tissue
94
primary cell
in vitro differentiated cells
12
cell line
Organ
66
pancreas
58
epithelium
36
heart
35
artery
35
blood vessel
35
vasculature
31
eye
8
bone element
8
skeleton
7
connective tissue
1
adipose tissue
1
brain
Project
106
AMP
76
HPAP
23
T1D
Genome assembly (visualization)
41
GRCh38
39
hg19
Lab
96
AMP-T2D consortium
76
Klaus Kaestner, Upenn
23
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
12
inconsistent ontology term
biosample_type!
in vitro differentiated cells
lab.title!
Bing Ren, UCSD
month_released!
May, 2023
BIOSAMPLE
ASSAY
205 results
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Clear Filters
total RNA-seq
ATAC-seq
MeRIP-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
single cell RNA-seq
tissue
coronary artery
35
islet of Langerhans
5
11
4
2
retina
2
15
pigmented layer of retina
2
12
acetabular part of hip bone
1
1
+ See 6 more…
primary cell
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
osteoblast
4
1
1
gabaergic neuron
3
+ See 3 more…
cell line
EndoC_BH1
6
3
2
1
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