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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
Assay category
94
DNA binding
Target of assay
755
histone modification
754
histone
447
transcription factor
387
narrow histone mark
367
broad histone mark
254
control
94
RNA binding protein
89
recombinant protein
33
chromatin remodeller
5
other context
5
other post-translational modification
Date released
37
November, 2017
21
November, 2018
6
January, 2019
5
May, 2019
5
May, 2024
5
October, 2018
4
April, 2019
4
June, 2019
2
August, 2017
2
December, 2017
2
December, 2018
1
August, 2021
Available data
91
bed narrowPeak
91
bigWig
88
bam
85
bigBed narrowPeak
75
fastq
9
bed broadPeak
9
bigBed broadPeak
1
tar
Organism
94
Homo sapiens
Biosample type
64
cell line
20
tissue
in vitro differentiated cells
10
primary cell
Organ
56
liver
11
heart
10
blood
10
bodily fluid
pancreas
6
connective tissue
6
epithelium
5
adipose tissue
5
vasculature
4
blood vessel
3
brain
3
kidney
1
artery
1
eye
Project
94
AMP
Genome assembly (visualization)
85
GRCh38
85
hg19
Lab
88
AMP-T2D consortium
5
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
biosample_type!
in vitro differentiated cells
lab.title!
Karen Mohlke, UNC
organ_slims!
pancreas
BIOSAMPLE
ASSAY
94 results
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Clear Filters
ChIP-seq
cell line
HepG2
54
GM12878
10
tissue
left cardiac atrium
5
heart left ventricle
3
omental fat pad
3
subcutaneous adipose tissue
2
ascending aorta
1
+ See 6 more…
primary cell
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
cardiac fibroblast
1
cardiac muscle cell
1
+ See 4 more…
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