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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
528
total RNA-seq
86
RNA microarray
42
ChIP-seq
18
ATAC-seq
7
single cell RNA-seq
3
snDrop-seq
2
pCHi-C
1
Hi-C
Assay category
535
Transcription
42
DNA binding
18
DNA accessibility
1
3D chromatin structure
Target of assay
33
transcription factor
7
control
2
RNA binding protein
2
chromatin remodeller
Date released
644
February, 2021
406
November, 2017
343
August, 2017
341
May, 2020
306
October, 2019
277
August, 2021
267
May, 2021
218
June, 2019
168
July, 2018
120
May, 2019
113
February, 2023
108
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
66
May, 2022
56
March, 2020
56
November, 2019
51
December, 2017
49
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
5
March, 2019
5
March, 2023
4
January, 2018
3
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
589
bam
564
bigWig
538
tsv
89
txt
53
bed narrowPeak
35
fastq
30
bigBed narrowPeak
8
tagAlign
6
csv
2
bed bed3
2
bed bed3+
Organism
687
Homo sapiens
Biosample type
555
tissue
124
cell line
in vitro differentiated cells
8
primary cell
Organ
447
connective tissue
386
adipose tissue
150
bone element
66
artery
66
blood vessel
66
heart
66
vasculature
32
epithelium
27
blood
27
bodily fluid
26
pancreas
11
kidney
9
liver
8
skeleton
7
spleen
6
limb
Project
687
AMP
Genome assembly (visualization)
583
hg19
581
GRCh38
Lab
687
AMP-T2D consortium
Klaus Kaestner, Upenn
Audit category:
110
inconsistent ontology term
7
audit script error
1
inconsistent control
1
inconsistent replicate
biosample_type!
in vitro differentiated cells
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
687 results
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total RNA-seq
RNA microarray
ChIP-seq
ATAC-seq
single cell RNA-seq
snDrop-seq
pCHi-C
Hi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
spleen
7
kidney
6
+ See 16 more…
cell line
smooth muscle cell of the coronary artery
52
6
8
GM12878
27
EndoC_BH1
26
HepG2
1
1
1
iPSC derived cell line
2
primary cell
hepatocyte
5
osteoblast
1
1
1
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