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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
122
ChIP-seq
98
total RNA-seq
29
ATAC-seq
16
pCHi-C
1
DNAme array
Assay category
122
DNA binding
98
Transcription
29
DNA accessibility
1
DNA methylation
Target of assay
119
histone
119
histone modification
66
broad histone mark
53
narrow histone mark
3
control
Date released
406
November, 2017
341
May, 2020
304
October, 2019
286
August, 2017
276
August, 2021
266
May, 2021
242
February, 2021
200
June, 2019
200
May, 2022
188
February, 2023
166
July, 2018
120
May, 2019
90
July, 2019
87
November, 2018
80
April, 2019
73
September, 2018
59
September, 2020
55
November, 2019
54
March, 2020
53
October, 2018
51
December, 2017
47
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
30
January, 2019
23
February, 2020
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
January, 2018
3
June, 2018
1
August, 2022
Available data
214
bigWig
192
bam
128
bed narrowPeak
94
tsv
84
tagAlign
2
bed bed3+
Organism
266
Homo sapiens
Biosample type
205
primary cell
in vitro differentiated cells
40
tissue
21
cell line
Organ
58
pancreas
21
epithelium
2
heart
1
bone element
1
bone marrow
connective tissue
1
thymus
Project
152
T1D
114
AMP
Genome assembly (visualization)
227
hg19
192
GRCh38
Lab
187
Kyle Gaulton, UCSD
79
AMP-T2D consortium
Audit category:
22
inconsistent ontology term
biosample_type!
in vitro differentiated cells
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
month_released!
October, 2017
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
266 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
DNAme array
primary cell
monocyte
85
52
13
1
1
CD8-positive, alpha-beta T cell
33
2
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
neutrophil
1
1
+ See 10 more…
tissue
islet of Langerhans
36
cardiac atrium
1
cardiac ventricle
1
pancreas
1
thymus
1
cell line
EndoC_BH1
1
4
16
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