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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
514
ChIP-seq
159
total RNA-seq
6
DNase-seq
5
WGBS
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
ATAC-seq
2
RRBS
1
single cell RNA-seq
Assay category
514
DNA binding
163
Transcription
8
DNA accessibility
7
DNA methylation
3
3D chromatin structure
Target of assay
325
transcription factor
103
control
83
histone modification
82
histone
82
recombinant protein
55
RNA binding protein
51
narrow histone mark
31
broad histone mark
22
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
54
August, 2017
53
November, 2018
48
December, 2017
10
July, 2019
October, 2019
5
December, 2019
5
January, 2019
4
August, 2021
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
659
bam
568
bigWig
450
fastq
387
bed narrowPeak
344
bigBed narrowPeak
164
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bed bed3
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
698
Homo sapiens
Biosample type
370
cell line
315
tissue
in vitro differentiated cells
13
primary cell
Organ
704
pancreas
698
liver
584
connective tissue
489
adipose tissue
344
heart
307
epithelium
200
brain
189
vasculature
183
blood vessel
158
bone element
133
kidney
115
artery
96
musculature of body
61
blood
61
bodily fluid
53
limb
40
eye
25
spleen
18
ureter
16
skeleton
8
embryo
2
intestine
2
pericardium
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
nerve
1
ovary
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
698
AMP
Genome assembly (visualization)
569
hg19
510
GRCh38
Lab
698
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
biosample_type!
in vitro differentiated cells
month_released!
October, 2019
organ_slims!
small intestine
BIOSAMPLE
ASSAY
698 results
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ChIP-seq
total RNA-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
ATAC-seq
RRBS
single cell RNA-seq
cell line
HepG2
360
5
1
1
2
1
tissue
liver
140
146
2
3
1
1
1
1
1
right lobe of liver
10
3
2
1
2
1
primary cell
hepatocyte
4
5
1
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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