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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
Assay category
32
DNA binding
Target of assay
743
histone
743
histone modification
440
transcription factor
387
narrow histone mark
broad histone mark
264
control
99
RNA binding protein
89
recombinant protein
32
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
15
November, 2017
7
November, 2018
6
January, 2019
2
December, 2017
2
December, 2018
August, 2017
Available data
32
bam
32
bed narrowPeak
32
bigBed narrowPeak
32
bigWig
32
fastq
4
bed broadPeak
4
bigBed broadPeak
Organism
32
Homo sapiens
Biosample type
30
cell line
2
tissue
in vitro differentiated cells
Organ
22
liver
10
blood
10
bodily fluid
Project
32
AMP
Genome assembly (visualization)
32
hg19
30
GRCh38
Lab
32
AMP-T2D consortium
Audit category:
3
inconsistent control
Audit category:
6
missing controlled_by
Audit category:
11
inconsistent control read length
8
inconsistent control run_type
biosample_type!
in vitro differentiated cells
month_released!
August, 2017
January, 2018
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
32 results
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ChIP-seq
cell line
HepG2
20
GM12878
10
tissue
liver
2
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