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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ChIP-seq
8
snATAC-seq
1
ATAC-seq
Assay category
61
DNA binding
9
DNA accessibility
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
2
histone
2
histone modification
2
narrow histone mark
Date released
27
December, 2018
18
January, 2019
15
November, 2018
8
January, 2021
2
October, 2019
January, 2018
Available data
61
bam
60
fastq
55
bed narrowPeak
55
bigWig
54
bigBed narrowPeak
1
tagAlign
Organism
70
Homo sapiens
Biosample type
60
cell line
8
primary cell
2
tissue
Organ
943
pancreas
776
liver
586
connective tissue
500
epithelium
489
adipose tissue
392
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
95
musculature of body
68
blood
68
bodily fluid
61
eye
43
nerve
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
embryo
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
62
AMP
8
T1D
Genome assembly (visualization)
55
GRCh38
55
hg19
Lab
62
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
biosample_type!
in vitro differentiated cells
month_released!
January, 2018
organ_slims!
esophagus
BIOSAMPLE
ASSAY
70 results
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ChIP-seq
snATAC-seq
ATAC-seq
cell line
GM12878
60
primary cell
peripheral blood mononuclear cell
8
tissue
islet of Langerhans
1
pituitary gland
1
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