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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
5
RRBS
5
total RNA-seq
2
Hi-C
2
small RNA-seq
1
DNase-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
32
DNA binding
8
Transcription
5
DNA methylation
2
3D chromatin structure
2
DNA accessibility
Target of assay
27
histone
27
histone modification
16
broad histone mark
11
narrow histone mark
5
control
Date released
26
August, 2017
11
June, 2019
5
July, 2019
5
March, 2020
2
May, 2022
1
February, 2020
January, 2018
Available data
28
bigWig
22
bed narrowPeak
17
bam
15
tagAlign
14
bed broadPeak
9
bigBed narrowPeak
8
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bed bed3+
2
bedpe bed3+
2
fastq
2
hic
1
bigBed broadPeak
1
txt
Organism
50
Homo sapiens
Biosample type
36
tissue
14
primary cell
Organ
943
pancreas
774
liver
586
connective tissue
500
epithelium
489
adipose tissue
392
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
limb
95
musculature of body
68
blood
68
bodily fluid
61
eye
43
nerve
22
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
embryo
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
50
AMP
Genome assembly (visualization)
34
hg19
15
GRCh38
Lab
50
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
biosample_type!
in vitro differentiated cells
month_released!
January, 2018
organ_slims!
limb
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
50 results
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ChIP-seq
RRBS
total RNA-seq
Hi-C
small RNA-seq
DNase-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
1
psoas muscle
2
2
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
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