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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
450
total RNA-seq
207
ChIP-seq
93
single cell RNA-seq
49
ATAC-seq
32
DNase-seq
6
WGBS
4
pCHi-C
3
Hi-C
1
RNA microarray
Assay category
543
Transcription
207
DNA binding
81
DNA accessibility
6
DNA methylation
3
3D chromatin structure
Target of assay
129
histone
129
histone modification
77
broad histone mark
52
narrow histone mark
44
control
34
transcription factor
16
RNA binding protein
Date released
452
February, 2021
93
August, 2021
57
April, 2019
57
August, 2017
40
May, 2024
37
February, 2023
July, 2019
36
June, 2019
23
October, 2018
21
May, 2019
9
October, 2019
8
March, 2020
5
February, 2020
2
May, 2021
1
January, 2018
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
619
bam
615
bigWig
545
tsv
200
bed narrowPeak
104
bigBed narrowPeak
43
fastq
36
bed bed3+
33
bed broadPeak
32
bigBed broadPeak
14
tagAlign
3
bedpe bed3+
3
hic
2
bed bedMethyl
2
bigBed bedMethyl
Organism
844
Homo sapiens
Biosample type
771
tissue
66
cell line
8
primary cell
in vitro differentiated cells
Organ
937
pancreas
766
liver
569
connective tissue
487
epithelium
478
adipose tissue
367
heart
343
kidney
268
brain
224
vasculature
219
blood vessel
159
bone element
138
artery
117
limb
86
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
embryo
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
845
AMP
Genome assembly (visualization)
656
GRCh38
584
hg19
Lab
805
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
6
inconsistent ontology term
Audit category:
12
missing controlled_by
biosample_type!
in vitro differentiated cells
month_released!
July, 2019
BIOSAMPLE
ASSAY
845 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
Hi-C
RNA microarray
tissue
adipose tissue
382
2
3
3
1
heart left ventricle
1
35
18
3
1
1
left cardiac atrium
40
18
1
coronary artery
1
5
35
2
subcutaneous abdominal adipose tissue
36
3
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cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
cardiac fibroblast
5
3
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