Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
562
ChIP-seq
189
total RNA-seq
24
ATAC-seq
8
snATAC-seq
5
WGBS
4
DNase-seq
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
562
DNA binding
193
Transcription
36
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
387
transcription factor
113
control
92
histone modification
91
histone
82
recombinant protein
66
RNA binding protein
56
narrow histone mark
broad histone mark
32
chromatin remodeller
2
other context
2
other post-translational modification
Date released
307
November, 2017
194
May, 2020
68
November, 2018
45
December, 2017
40
May, 2022
35
August, 2017
33
August, 2021
28
December, 2018
23
January, 2019
10
July, 2019
8
January, 2021
5
December, 2019
4
October, 2019
3
February, 2021
3
March, 2020
June, 2019
1
February, 2020
1
January, 2018
Available data
702
bam
638
bigWig
492
fastq
457
bed narrowPeak
382
bigBed narrowPeak
174
tsv
68
tagAlign
53
bed broadPeak
53
bigBed broadPeak
10
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
808
Homo sapiens
Biosample type
453
cell line
336
tissue
19
primary cell
in vitro differentiated cells
Organ
861
pancreas
739
liver
549
connective tissue
469
adipose tissue
443
epithelium
300
heart
258
kidney
186
brain
184
vasculature
180
blood vessel
159
bone element
125
artery
69
blood
69
bodily fluid
56
limb
54
eye
37
musculature of body
27
nerve
21
spleen
20
lung
16
skeleton
13
vein
8
embryo
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
800
AMP
8
T1D
Genome assembly (visualization)
641
hg19
548
GRCh38
Lab
730
AMP-T2D consortium
40
Karen Mohlke, UNC
30
Bing Ren, UCSD
8
Kyle Gaulton, UCSD
Audit category:
28
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
21
inconsistent control read length
8
inconsistent control run_type
biosample_type!
in vitro differentiated cells
month_released!
June, 2019
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
808 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
369
14
1
1
2
2
2
1
GM12878
60
1
tissue
liver
123
167
20
3
2
1
1
1
1
1
right lobe of liver
7
3
1
1
2
2
primary cell
hepatocyte
3
5
1
peripheral blood mononuclear cell
8
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
Download