Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
102
ChIP-seq
67
total RNA-seq
64
ATAC-seq
6
snATAC-seq
5
STARR-seq
4
Hi-C
2
Capture-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
RNA microarray
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
177
Transcription
102
DNA binding
70
DNA accessibility
4
3D chromatin structure
1
DNA sequencing
Target of assay
66
histone
66
histone modification
39
broad histone mark
27
narrow histone mark
19
control
17
transcription factor
5
RNA binding protein
Date released
689
February, 2021
406
November, 2017
343
August, 2017
341
May, 2020
306
October, 2019
277
August, 2021
267
May, 2021
218
June, 2019
200
May, 2022
189
February, 2023
168
July, 2018
May, 2019
108
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
56
March, 2020
56
November, 2019
51
December, 2017
49
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
146
bed narrowPeak
116
tsv
91
bam
90
bigWig
64
bigBed narrowPeak
64
xls
57
txt
4
tagAlign
3
bed bed3+
3
hic
2
bedpe bed3+
1
vcf
Organism
357
Homo sapiens
Biosample type
309
tissue
46
cell line
in vitro differentiated cells
5
primary cell
2
stem cell
Organ
153
kidney
149
heart
35
liver
8
embryo
6
blood vessel
6
epithelium
6
vasculature
4
pancreas
2
artery
1
adipose tissue
1
connective tissue
Project
357
AMP
4
community
1
ITG
Genome assembly (visualization)
140
GRCh38
92
hg19
Lab
193
AMP-T2D consortium
128
Katalin Susztak, Upenn
36
Bing Ren, UCSD
4
Anna Gloyn, Oxford
1
ITG
Audit category:
3
inconsistent ontology term
biosample_type!
in vitro differentiated cells
month_released!
May, 2019
BIOSAMPLE
ASSAY
362 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
CRISPR RNA-seq
CRISPRi RNA-seq
RNA microarray
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
tissue
kidney
8
23
49
64
6
1
heart left ventricle
18
35
heart right ventricle
17
13
left cardiac atrium
18
right cardiac atrium
18
+ See 12 more…
cell line
HepG2
18
9
2
1
1
H1-hESC
8
EndoC-BH1
1
1
EndoC_BH1
2
HEK293T
2
+ See 1 more…
primary cell
hepatocyte
4
chondrocytes
1
stem cell
SB Ad3.1
1
1
See all biosamples
Download