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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
81
ChIP-seq
72
total RNA-seq
64
ATAC-seq
6
snATAC-seq
5
STARR-seq
4
Hi-C
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
178
Transcription
81
DNA binding
70
DNA accessibility
4
3D chromatin structure
1
DNA sequencing
Target of assay
53
transcription factor
13
control
13
histone
13
histone modification
9
RNA binding protein
8
chromatin remodeller
7
narrow histone mark
6
broad histone mark
Date released
689
February, 2021
406
November, 2017
343
August, 2017
341
May, 2020
306
October, 2019
277
August, 2021
267
May, 2021
218
June, 2019
200
May, 2022
189
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
56
March, 2020
56
November, 2019
51
December, 2017
49
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
132
bed narrowPeak
121
tsv
81
bigWig
76
bam
65
fastq
64
xls
57
txt
51
bigBed narrowPeak
4
tagAlign
3
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
341
Homo sapiens
Biosample type
243
tissue
95
cell line
in vitro differentiated cells
4
primary cell
Organ
130
kidney
92
heart
45
blood
45
bodily fluid
41
liver
14
spleen
8
embryo
6
blood vessel
6
epithelium
6
vasculature
4
pancreas
2
artery
1
adipose tissue
1
connective tissue
Project
342
AMP
Genome assembly (visualization)
131
GRCh38
83
hg19
Lab
178
AMP-T2D consortium
128
Katalin Susztak, Upenn
36
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
1
inconsistent control
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
342 results
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single cell RNA-seq
ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
49
64
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 12 more…
cell line
GM12878
45
HepG2
18
14
2
2
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
+ See 1 more…
primary cell
hepatocyte
4
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