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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
67
ATAC-seq
67
total RNA-seq
20
ChIP-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
GRO-seq
1
RNA microarray
1
whole genome sequencing assay
Assay category
173
Transcription
73
DNA accessibility
20
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
6
histone
6
histone modification
5
control
4
narrow histone mark
broad histone mark
1
RNA binding protein
Date released
689
February, 2021
356
November, 2017
341
May, 2020
275
August, 2021
254
August, 2017
247
October, 2019
210
June, 2019
201
May, 2021
200
May, 2022
189
February, 2023
168
July, 2018
108
July, 2019
88
November, 2018
62
May, 2019
59
September, 2020
57
October, 2018
56
September, 2018
55
March, 2020
50
November, 2019
49
April, 2018
47
December, 2017
47
September, 2023
43
April, 2019
35
December, 2018
26
January, 2019
25
February, 2020
20
May, 2024
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
13
October, 2017
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
116
tsv
79
bed narrowPeak
64
xls
57
txt
27
bigWig
11
bam
3
tagAlign
2
bed bed3+
2
bedpe bed3+
2
hic
1
fastq
1
vcf
Organism
278
Homo sapiens
Biosample type
231
tissue
44
cell line
in vitro differentiated cells
3
primary cell
1
stem cell
Organ
130
kidney
92
heart
33
liver
8
embryo
6
blood vessel
6
vasculature
5
epithelium
4
pancreas
2
adipose tissue
2
artery
2
connective tissue
1
blood
1
bodily fluid
1
musculature of body
Project
279
AMP
Genome assembly (visualization)
74
GRCh38
28
hg19
1
hg18
Lab
128
Katalin Susztak, Upenn
116
AMP-T2D consortium
35
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
biosample_type!
in vitro differentiated cells
organ_slims!
ovary
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
279 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
GRO-seq
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 13 more…
cell line
HepG2
9
17
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
GM12878
1
+ See 1 more…
primary cell
hepatocyte
3
stem cell
hESC
1
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