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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
single cell RNA-seq
72
ATAC-seq
67
total RNA-seq
37
ChIP-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
167
Transcription
78
DNA accessibility
37
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
18
histone
18
histone modification
12
broad histone mark
11
transcription factor
8
control
6
narrow histone mark
1
RNA binding protein
Date released
623
February, 2021
400
November, 2017
August, 2017
341
May, 2020
271
August, 2021
267
May, 2021
259
October, 2019
211
June, 2019
200
May, 2022
168
July, 2018
154
February, 2023
96
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
70
May, 2019
59
September, 2020
56
November, 2019
52
March, 2020
51
December, 2017
49
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
110
tsv
93
bed narrowPeak
64
xls
57
txt
39
bigWig
27
bam
18
tagAlign
17
fastq
6
bigBed narrowPeak
4
bed broadPeak
3
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
293
Homo sapiens
Biosample type
246
tissue
44
cell line
in vitro differentiated cells
4
primary cell
Organ
130
kidney
92
heart
35
liver
16
brain
9
pancreas
8
embryo
6
blood vessel
6
epithelium
vasculature
2
adipose tissue
2
artery
2
connective tissue
1
spleen
Project
294
AMP
Genome assembly (visualization)
89
GRCh38
40
hg19
Lab
129
AMP-T2D consortium
128
Katalin Susztak, Upenn
36
Bing Ren, UCSD
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
biosample_type!
in vitro differentiated cells
month_released!
August, 2017
organ_slims!
vasculature
BIOSAMPLE
ASSAY
294 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 14 more…
cell line
HepG2
9
18
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
primary cell
hepatocyte
4
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