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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 106single cell RNA-seq
  • 67total RNA-seq
  • 64ATAC-seq
  • 22ChIP-seq
  • 6snATAC-seq
  • 5STARR-seq
  • 3Hi-C
  • 2Capture-C
  • 1RNA microarray
  • 1whole genome sequencing assay
Assay category
  • 173Transcription
  • 70DNA accessibility
  • 22DNA binding
  • 33D chromatin structure
  • 1DNA sequencing
Target of assay
  • 11transcription factor
  • 6histone
  • 6histone modification
  • 5control
  • 4narrow histone mark
  • 2broad histone mark
  • 1RNA binding protein
Date released
  • 689February, 2021
  • 406November, 2017
  • 343August, 2017
  • 341May, 2020
  • 306October, 2019
  • 277August, 2021
  • 267May, 2021
  • 218June, 2019
  • 200May, 2022
  • 189February, 2023
  • 168July, 2018
  • 120May, 2019
  • 108July, 2019
  • 88November, 2018
  • 80April, 2019
  • 76October, 2018
  • 73September, 2018
  • 59September, 2020
  • 56March, 2020
  • 56November, 2019
  • 51December, 2017
  • 49April, 2018
  • 47September, 2023
  • 40May, 2024
  • 35December, 2018
  • 30January, 2019
  • 25February, 2020
  • 23October, 2017
  • 19April, 2020
  • 16January, 2021
  • 16November, 2020
  • 15May, 2023
  • 11September, 2017
  • 8December, 2019
  • 7August, 2020
  • 5March, 2019
  • 5March, 2023
  • 4January, 2018
  • 4October, 2022
  • 3August, 2018
  • 3June, 2018
  • 1August, 2022
Available data
  • 116tsv
  • 81bed narrowPeak
  • 64xls
  • 57txt
  • 25bigWig
  • 12bam
  • 4tagAlign
  • 3bed bed3+
  • 2bedpe bed3+
  • 2hic
  • 1vcf
Organism
  • 276Homo sapiens
Biosample type
  • 229tissue
  • 44cell line
  • in vitro differentiated cells
  • 4primary cell
Organ
  • 130kidney
  • 92heart
  • 35liver
  • 8embryo
  • 6blood vessel
  • 6epithelium
  • 6vasculature
  • 4pancreas
  • 2artery
  • 1adipose tissue
  • 1connective tissue
Project
  • 277AMP
Genome assembly (visualization)
  • 75GRCh38
  • 27hg19
Lab
  • 128Katalin Susztak, Upenn
  • 113AMP-T2D consortium
  • 36Bing Ren, UCSD
Audit category:
  • 3inconsistent ontology term
biosample_type!
  • in vitro differentiated cells
BIOSAMPLE
ASSAY

277 results

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Clear Filters
single cell RNA-seq
total RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney8496461
heart left ventricle18
left cardiac atrium18
right cardiac atrium18
heart right ventricle17
cell line
HepG2918211
H1-hESC8
EndoC_BH12
HEK293T2
Synthesized DNA1
primary cell
hepatocyte4
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