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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
MeRIP-seq
9
total RNA-seq
6
ATAC-seq
6
ChIP-seq
2
RNA microarray
1
DNase-seq
1
single cell RNA-seq
Assay category
10
Transcription
7
DNA accessibility
6
DNA binding
Target of assay
11
control
5
nucleotide modification
Date released
689
February, 2021
406
November, 2017
343
August, 2017
341
May, 2020
302
October, 2019
277
August, 2021
267
May, 2021
218
June, 2019
200
May, 2022
189
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
56
November, 2019
55
March, 2020
51
December, 2017
49
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
22
bam
15
bigWig
11
fastq
11
tsv
7
bed narrowPeak
6
bigBed narrowPeak
3
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
35
Homo sapiens
Biosample type
16
primary cell
13
tissue
6
cell line
in vitro differentiated cells
Organ
21
pancreas
17
epithelium
6
connective tissue
5
liver
3
kidney
Project
35
AMP
Genome assembly (visualization)
18
GRCh38
18
hg19
Lab
25
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
2
audit script error
biosample_type!
in vitro differentiated cells
organ_slims!
ovary
BIOSAMPLE
ASSAY
35 results
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MeRIP-seq
total RNA-seq
ATAC-seq
ChIP-seq
RNA microarray
DNase-seq
single cell RNA-seq
primary cell
osteoblast
4
1
1
hepatocyte
5
pancreatic alpha cell
2
pancreatic beta cell
2
pancreatic acinar cell
1
tissue
islet of Langerhans
4
6
kidney
1
kidney interstitium
1
renal glomerulus
1
cell line
EndoC_BH1
6
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