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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
471
total RNA-seq
84
RNA microarray
27
snATAC-seq
18
single cell RNA-seq
10
ATAC-seq
6
WGBS
3
snDrop-seq
2
ChIP-seq
2
pCHi-C
Assay category
489
Transcription
37
DNA accessibility
6
DNA methylation
2
DNA binding
Target of assay
1
control
1
transcription factor
Date released
623
February, 2021
403
November, 2017
343
August, 2017
341
May, 2020
271
August, 2021
267
May, 2021
259
October, 2019
213
June, 2019
200
May, 2022
168
July, 2018
154
February, 2023
97
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
70
May, 2019
59
September, 2020
56
November, 2019
52
March, 2020
51
December, 2017
49
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
August, 2022
Available data
485
tsv
484
bam
473
bigWig
89
txt
45
fastq
11
bed narrowPeak
6
csv
2
bed bed3
2
bed bed3+
2
tagAlign
Organism
623
Homo sapiens
Biosample type
545
tissue
48
primary cell
30
cell line
in vitro differentiated cells
Organ
447
connective tissue
386
adipose tissue
150
bone element
66
artery
blood vessel
66
heart
66
vasculature
32
epithelium
32
pancreas
8
kidney
8
skeleton
6
limb
3
liver
Project
578
AMP
45
HPAP
Genome assembly (visualization)
484
hg19
482
GRCh38
Lab
578
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
110
inconsistent ontology term
32
audit script error
1
inconsistent replicate
biosample_type!
in vitro differentiated cells
month_released!
August, 2022
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
623 results
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Clear Filters
total RNA-seq
RNA microarray
snATAC-seq
single cell RNA-seq
ATAC-seq
WGBS
snDrop-seq
ChIP-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
kidney
5
visceral abdominal adipose tissue
3
+ See 13 more…
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
1
cell line
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
2
See all biosamples
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