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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
497
total RNA-seq
84
RNA microarray
27
snATAC-seq
18
ATAC-seq
18
single cell RNA-seq
3
ChIP-seq
3
snDrop-seq
2
pCHi-C
Assay category
515
Transcription
45
DNA accessibility
3
DNA binding
Target of assay
transcription factor
3
control
Date released
652
February, 2021
341
May, 2020
289
August, 2017
264
October, 2019
260
August, 2021
246
May, 2021
196
June, 2019
158
November, 2017
137
February, 2023
135
July, 2018
120
May, 2022
111
May, 2019
95
July, 2019
74
April, 2019
59
October, 2018
50
March, 2020
47
September, 2023
40
November, 2019
40
September, 2020
35
May, 2024
25
February, 2020
24
November, 2018
23
October, 2017
20
December, 2017
19
April, 2020
16
April, 2018
16
January, 2019
16
January, 2021
15
May, 2023
12
September, 2018
10
November, 2020
7
December, 2018
6
September, 2017
5
March, 2019
March, 2023
4
January, 2018
2
December, 2019
2
June, 2018
1
August, 2022
1
October, 2022
Available data
519
bam
505
tsv
498
bigWig
89
txt
39
fastq
18
bed narrowPeak
6
csv
3
tagAlign
2
bed bed3
2
bed bed3+
Organism
652
Homo sapiens
Biosample type
545
tissue
65
cell line
42
primary cell
in vitro differentiated cells
Organ
447
connective tissue
386
adipose tissue
150
bone element
62
artery
62
blood vessel
62
heart
62
vasculature
epithelium
32
pancreas
8
kidney
8
skeleton
6
limb
3
liver
Project
613
AMP
39
HPAP
Genome assembly (visualization)
517
hg19
515
GRCh38
Lab
613
AMP-T2D consortium
39
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
32
audit script error
1
inconsistent replicate
biosample_type!
in vitro differentiated cells
month_released!
March, 2023
organ_slims!
epithelium
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
652 results
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Clear Filters
total RNA-seq
RNA microarray
snATAC-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
kidney
5
visceral abdominal adipose tissue
3
+ See 13 more…
cell line
smooth muscle cell of the coronary artery
52
8
2
HepG2
1
1
iPSC derived cell line
1
primary cell
Langerhans cell
27
12
osteoblast
1
1
1
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