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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
523
total RNA-seq
84
RNA microarray
65
single cell RNA-seq
27
snATAC-seq
18
ATAC-seq
6
WGBS
5
ChIP-seq
3
snDrop-seq
2
pCHi-C
Assay category
588
Transcription
45
DNA accessibility
6
DNA methylation
5
DNA binding
Target of assay
5
transcription factor
control
Date released
686
February, 2021
335
November, 2017
May, 2020
301
August, 2017
272
August, 2021
267
October, 2019
264
May, 2021
210
June, 2019
200
May, 2022
189
February, 2023
168
July, 2018
105
July, 2019
97
May, 2019
82
November, 2018
73
September, 2018
66
April, 2019
59
September, 2020
56
March, 2020
54
November, 2019
49
April, 2018
47
October, 2018
47
September, 2023
40
May, 2024
38
December, 2017
31
December, 2018
26
January, 2019
25
February, 2020
20
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
November, 2020
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
5
September, 2017
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
547
bam
537
tsv
529
bigWig
89
txt
45
fastq
23
bed narrowPeak
6
csv
5
tagAlign
2
bed bed3
2
bed bed3+
Organism
733
Homo sapiens
Biosample type
592
tissue
93
cell line
48
primary cell
in vitro differentiated cells
Organ
447
connective tissue
386
adipose tissue
150
bone element
64
artery
64
blood vessel
64
heart
64
vasculature
55
kidney
32
epithelium
32
pancreas
8
skeleton
6
limb
3
liver
Project
641
AMP
47
KPMP
45
HPAP
Genome assembly (visualization)
548
hg19
546
GRCh38
Lab
641
AMP-T2D consortium
47
KPMP
45
Klaus Kaestner, Upenn
Audit category:
110
inconsistent ontology term
32
audit script error
1
inconsistent replicate
biosample_type!
in vitro differentiated cells
month_released!
May, 2020
target.investigated_as!
control
BIOSAMPLE
ASSAY
733 results
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total RNA-seq
RNA microarray
single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
ChIP-seq
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
kidney
52
visceral abdominal adipose tissue
3
+ See 13 more…
cell line
smooth muscle cell of the coronary artery
52
8
4
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
1
primary cell
Langerhans cell
12
27
pancreatic alpha cell
6
osteoblast
1
1
1
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