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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
497
total RNA-seq
84
RNA microarray
27
snATAC-seq
18
ATAC-seq
18
single cell RNA-seq
8
ChIP-seq
3
snDrop-seq
2
pCHi-C
Assay category
515
Transcription
45
DNA accessibility
8
DNA binding
Target of assay
5
transcription factor
3
control
Date released
657
February, 2021
406
November, 2017
341
May, 2020
288
October, 2019
273
August, 2021
214
June, 2019
209
May, 2021
155
August, 2017
133
February, 2023
118
May, 2019
102
July, 2019
96
May, 2022
81
November, 2018
80
April, 2019
51
December, 2017
47
September, 2023
42
March, 2020
40
May, 2024
40
September, 2020
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2018
19
April, 2020
18
October, 2017
15
May, 2023
11
July, 2018
10
April, 2018
8
December, 2019
8
January, 2021
6
November, 2020
5
March, 2023
4
January, 2018
2
June, 2018
1
November, 2019
1
October, 2022
1
September, 2018
Available data
524
bam
505
tsv
503
bigWig
89
txt
39
fastq
23
bed narrowPeak
8
tagAlign
6
csv
2
bed bed3
2
bed bed3+
Organism
657
Homo sapiens
Biosample type
545
tissue
70
cell line
42
primary cell
in vitro differentiated cells
Organ
447
connective tissue
386
adipose tissue
150
bone element
66
artery
66
blood vessel
66
heart
66
vasculature
32
epithelium
pancreas
8
kidney
8
skeleton
6
limb
3
liver
Project
618
AMP
39
HPAP
Genome assembly (visualization)
522
hg19
520
GRCh38
Lab
618
AMP-T2D consortium
39
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
32
audit script error
1
inconsistent replicate
biosample_type!
in vitro differentiated cells
organ_slims!
pancreas
BIOSAMPLE
ASSAY
657 results
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total RNA-seq
RNA microarray
snATAC-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
kidney
5
visceral abdominal adipose tissue
3
+ See 13 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
HepG2
1
1
iPSC derived cell line
2
primary cell
Langerhans cell
27
12
osteoblast
1
1
1
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