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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
total RNA-seq
64
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
single cell RNA-seq
Assay category
86
Transcription
66
DNA accessibility
Date released
689
February, 2021
369
November, 2017
341
May, 2020
339
August, 2017
285
October, 2019
276
August, 2021
267
May, 2021
208
June, 2019
200
May, 2022
168
July, 2018
158
February, 2023
115
May, 2019
107
July, 2019
76
April, 2019
73
September, 2018
67
November, 2018
65
October, 2018
59
September, 2020
56
March, 2020
55
November, 2019
49
April, 2018
49
December, 2017
47
September, 2023
35
May, 2024
33
December, 2018
24
February, 2020
24
January, 2019
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
76
fastq
36
bed narrowPeak
12
tsv
5
bed bed3
4
txt
Organism
157
Homo sapiens
Biosample type
88
primary cell
64
tissue
in vitro differentiated cells
6
cell line
Organ
56
pancreas
52
epithelium
36
heart
35
artery
35
blood vessel
35
vasculature
eye
8
bone element
8
skeleton
1
adipose tissue
1
brain
1
connective tissue
Project
76
HPAP
59
AMP
23
T1D
Genome assembly (visualization)
35
GRCh38
6
hg19
Lab
76
Klaus Kaestner, Upenn
59
AMP-T2D consortium
23
Kyle Gaulton, UCSD
Audit category:
6
inconsistent ontology term
biosample_type!
in vitro differentiated cells
organ_slims!
eye
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
158 results
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Clear Filters
total RNA-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
single cell RNA-seq
primary cell
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
gabaergic neuron
3
glutamatergic neuron
3
+ See 2 more…
tissue
coronary artery
35
islet of Langerhans
5
11
2
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
+ See 4 more…
cell line
EndoC_BH1
3
2
1
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