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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 91ATAC-seq
  • 89total RNA-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2HiChIP
  • 2snATAC-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1single cell RNA-seq
Assay category
  • 93DNA accessibility
  • 90Transcription
Date released
  • 689February, 2021
  • 406November, 2017
  • 343August, 2017
  • 341May, 2020
  • 306October, 2019
  • 277August, 2021
  • 267May, 2021
  • 218June, 2019
  • 200May, 2022
  • 189February, 2023
  • 168July, 2018
  • 120May, 2019
  • 108July, 2019
  • 88November, 2018
  • 80April, 2019
  • 76October, 2018
  • 73September, 2018
  • 59September, 2020
  • 56March, 2020
  • 56November, 2019
  • 51December, 2017
  • 49April, 2018
  • 47September, 2023
  • 40May, 2024
  • 35December, 2018
  • 30January, 2019
  • 25February, 2020
  • 23October, 2017
  • 19April, 2020
  • 16January, 2021
  • 16November, 2020
  • 15May, 2023
  • 11September, 2017
  • 8December, 2019
  • 7August, 2020
  • 5March, 2019
  • 5March, 2023
  • 4January, 2018
  • 4October, 2022
  • 3August, 2018
  • 3June, 2018
  • 1August, 2022
Available data
  • 76fastq
  • 63bed narrowPeak
  • 16tsv
  • 5bed bed3
  • 4txt
Organism
  • 188Homo sapiens
Biosample type
  • 95tissue
  • 88primary cell
  • in vitro differentiated cells
  • 6cell line
Organ
  • 56pancreas
  • 52epithelium
  • 36heart
  • 35artery
  • 35blood vessel
  • 35vasculature
  • 31eye
  • 8bone element
  • 8skeleton
  • 1adipose tissue
  • 1brain
  • 1connective tissue
Project
  • 90AMP
  • 76HPAP
  • 23T1D
Genome assembly (visualization)
  • 35GRCh38
  • 33hg19
Lab
  • 90AMP-T2D consortium
  • 76Klaus Kaestner, Upenn
  • 23Kyle Gaulton, UCSD
Audit category:
  • 6inconsistent ontology term
biosample_type!
  • in vitro differentiated cells
BIOSAMPLE
ASSAY

189 results

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Clear Filters
ATAC-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
single cell RNA-seq
tissue
coronary artery35
islet of Langerhans1152
retina152
pigmented layer of retina122
acetabular part of hip bone11
primary cell
exocrine cell39
pancreatic alpha cell27
pancreatic beta cell10
gabaergic neuron3
glutamatergic neuron3
cell line
EndoC_BH1321
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