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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ChIP-seq
32
total RNA-seq
25
ATAC-seq
4
single cell RNA-seq
Assay category
57
DNA binding
36
Transcription
25
DNA accessibility
Target of assay
39
histone
39
histone modification
21
broad histone mark
18
narrow histone mark
14
transcription factor
6
RNA binding protein
6
chromatin remodeller
4
control
Date released
689
February, 2021
406
November, 2017
343
August, 2017
341
May, 2020
306
October, 2019
277
August, 2021
267
May, 2021
218
June, 2019
200
May, 2022
189
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
56
March, 2020
56
November, 2019
51
December, 2017
49
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
103
fastq
102
bam
98
bigWig
67
bed narrowPeak
35
bigBed narrowPeak
31
tsv
1
csv
Organism
118
Homo sapiens
Biosample type
73
primary cell
23
cell line
22
tissue
Organ
72
pancreas
61
epithelium
18
blood
18
bodily fluid
14
kidney
7
spleen
5
liver
1
adipose tissue
1
connective tissue
Project
118
AMP
Genome assembly (visualization)
110
GRCh38
99
hg19
Lab
104
AMP-T2D consortium
14
Katalin Susztak, Upenn
Audit category:
32
missing controlled_by
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
118 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
primary cell
pancreatic ductal cell
13
4
4
pancreatic beta cell
10
4
pancreatic acinar cell
8
2
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
+ See 1 more…
cell line
GM12878
18
HepG2
5
tissue
kidney
11
3
spleen
7
adipose tissue
1
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