Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
100
ATAC-seq
50
ChIP-seq
16
snATAC-seq
1
pCHi-C
Assay category
190
Transcription
116
DNA accessibility
50
DNA binding
Target of assay
27
histone
27
histone modification
27
narrow histone mark
23
control
Date released
689
February, 2021
406
November, 2017
343
August, 2017
341
May, 2020
306
October, 2019
277
August, 2021
267
May, 2021
218
June, 2019
200
May, 2022
189
February, 2023
168
July, 2018
120
May, 2019
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
56
March, 2020
56
November, 2019
51
December, 2017
49
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
283
bam
260
bigWig
189
tsv
50
tagAlign
27
bed narrowPeak
Organism
357
Homo sapiens
Biosample type
201
tissue
155
primary cell
1
cell line
Organ
194
liver
8
blood
8
bodily fluid
8
pancreas
Project
296
AMP
61
T1D
Genome assembly (visualization)
260
hg19
207
GRCh38
Lab
296
AMP-T2D consortium
61
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
biosample_type!
in vitro differentiated cells
month_released!
July, 2019
November, 2020
BIOSAMPLE
ASSAY
357 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
pCHi-C
tissue
liver
143
50
islet of Langerhans
4
pancreas
4
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
peripheral blood mononuclear cell
8
B cell
2
2
+ See 25 more…
cell line
HepG2
1
See all biosamples
Download