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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
182
DNase-seq
39
total RNA-seq
31
ChIP-seq
18
small RNA-seq
15
RRBS
10
WGBS
6
Hi-C
4
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
188
DNA accessibility
60
Transcription
31
DNA binding
25
DNA methylation
6
3D chromatin structure
Target of assay
19
histone
19
histone modification
11
control
11
narrow histone mark
8
broad histone mark
4
RNA binding protein
4
transcription factor
Date released
623
February, 2021
403
November, 2017
343
August, 2017
341
May, 2020
271
August, 2021
267
May, 2021
259
October, 2019
213
June, 2019
200
May, 2022
168
July, 2018
154
February, 2023
97
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
September, 2018
70
May, 2019
59
September, 2020
56
November, 2019
52
March, 2020
51
December, 2017
49
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
286
bam
280
bigWig
210
bed narrowPeak
207
bigBed narrowPeak
184
bed bed3+
182
bed broadPeak
182
bigBed broadPeak
60
tsv
22
bed bedMethyl
22
bigBed bedMethyl
2
hdf5
Organism
310
Homo sapiens
Biosample type
230
tissue
80
primary cell
Organ
92
kidney
60
heart
53
musculature of body
48
brain
37
limb
36
connective tissue
33
epithelium
19
vasculature
18
ureter
blood vessel
13
adipose tissue
12
liver
10
pancreas
8
eye
5
artery
2
pericardium
Project
310
AMP
Genome assembly (visualization)
276
GRCh38
265
hg19
Lab
310
AMP-T2D consortium
Audit category:
28
inconsistent ontology term
biosample_type!
in vitro differentiated cells
month_released!
September, 2018
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
310 results
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Clear Filters
DNase-seq
total RNA-seq
ChIP-seq
small RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart
18
2
1
1
muscle of arm
17
kidney
13
1
1
muscle of leg
13
1
brain
12
1
+ See 46 more…
primary cell
skeletal muscle satellite cell
1
8
1
cardiac fibroblast
3
5
1
mesenchymal stem cell
7
epithelial cell of proximal tubule
1
1
3
1
cardiac muscle cell
1
3
1
+ See 23 more…
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