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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
437
ChIP-seq
187
DNase-seq
Assay category
437
DNA binding
187
DNA accessibility
Target of assay
248
transcription factor
107
histone
107
histone modification
79
control
66
recombinant protein
58
broad histone mark
49
narrow histone mark
41
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
689
February, 2021
406
November, 2017
343
August, 2017
341
May, 2020
306
October, 2019
277
August, 2021
266
May, 2021
218
June, 2019
200
May, 2022
189
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
November, 2019
55
March, 2020
51
December, 2017
49
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
610
bam
544
bigWig
523
bed narrowPeak
522
bigBed narrowPeak
324
fastq
257
bed broadPeak
251
bigBed broadPeak
187
bed bed3+
78
tagAlign
3
tar
Organism
624
Homo sapiens
Biosample type
315
cell line
245
tissue
64
primary cell
Organ
317
liver
121
brain
81
kidney
43
musculature of body
35
heart
32
limb
26
epithelium
18
connective tissue
18
ureter
13
vasculature
8
blood vessel
7
eye
4
pancreas
2
artery
1
adipose tissue
Project
624
AMP
Genome assembly (visualization)
490
GRCh38
468
hg19
Lab
624
AMP-T2D consortium
Audit category:
26
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
biosample_type!
in vitro differentiated cells
month_released!
November, 2019
organ_slims!
thymus
BIOSAMPLE
ASSAY
624 results
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Clear Filters
ChIP-seq
DNase-seq
cell line
HepG2
315
tissue
layer of hippocampus
22
heart
18
muscle of arm
17
caudate nucleus
15
1
substantia nigra
15
+ See 38 more…
primary cell
cardiac fibroblast
5
3
skeletal muscle satellite cell
8
mesenchymal stem cell
7
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
+ See 17 more…
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