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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
ChIP-seq
98
total RNA-seq
34
ATAC-seq
17
pCHi-C
1
DNAme array
Assay category
128
DNA binding
98
Transcription
34
DNA accessibility
1
DNA methylation
Target of assay
119
histone
119
histone modification
66
broad histone mark
53
narrow histone mark
9
control
Date released
689
February, 2021
406
November, 2017
343
August, 2017
341
May, 2020
306
October, 2019
277
August, 2021
267
May, 2021
218
June, 2019
200
May, 2022
189
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
56
March, 2020
56
November, 2019
51
December, 2017
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
219
bigWig
203
bam
133
bed narrowPeak
94
tsv
84
tagAlign
11
fastq
5
bigBed narrowPeak
4
bed bed3+
Organism
278
Homo sapiens
Biosample type
211
primary cell
in vitro differentiated cells
46
tissue
21
cell line
Organ
69
pancreas
26
epithelium
2
heart
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
153
T1D
125
AMP
Genome assembly (visualization)
234
hg19
199
GRCh38
Lab
188
Kyle Gaulton, UCSD
90
AMP-T2D consortium
Audit category:
22
inconsistent ontology term
biosample_type!
in vitro differentiated cells
month_released!
April, 2018
August, 2020
BIOSAMPLE
ASSAY
278 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
DNAme array
primary cell
monocyte
85
52
13
1
1
CD8-positive, alpha-beta T cell
33
2
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
neutrophil
1
1
+ See 14 more…
tissue
islet of Langerhans
6
36
cardiac atrium
1
cardiac ventricle
1
pancreas
1
thymus
1
cell line
EndoC_BH1
1
4
16
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