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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
3
Hi-C
2
total RNA-seq
1
MPRA
Assay category
74
DNA binding
3
3D chromatin structure
2
Transcription
Target of assay
30
histone
30
histone modification
29
control
19
broad histone mark
15
transcription factor
11
RNA binding protein
11
narrow histone mark
Date released
689
February, 2021
406
November, 2017
343
August, 2017
341
May, 2020
305
October, 2019
277
August, 2021
267
May, 2021
218
June, 2019
200
May, 2022
189
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
56
March, 2020
56
November, 2019
51
December, 2017
49
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
76
bam
60
fastq
47
bigWig
45
bed narrowPeak
45
bigBed narrowPeak
3
bedpe bed3+
3
cool
3
hic
2
tsv
1
txt
Organism
79
Homo sapiens
Biosample type
74
tissue
5
primary cell
1
cell line
Organ
56
pancreas
23
adipose tissue
23
connective tissue
5
epithelium
Project
77
AMP
3
HPAP
Genome assembly (visualization)
50
hg19
47
GRCh38
Lab
77
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
Audit category:
1
inconsistent control read length
biosample_type!
in vitro differentiated cells
month_released!
November, 2020
organ_slims!
skin of body
BIOSAMPLE
ASSAY
80 results
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Clear Filters
ChIP-seq
Hi-C
total RNA-seq
MPRA
tissue
body of pancreas
33
endocrine pancreas
16
subcutaneous adipose tissue
12
omental fat pad
11
pancreas
2
primary cell
pancreatic acinar cell
1
2
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
MIN6
1
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