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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
55
ChIP-seq
45
ATAC-seq
6
DNase-seq
2
Hi-C
2
single cell RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
58
Transcription
55
DNA binding
52
DNA accessibility
2
3D chromatin structure
Target of assay
39
histone
39
histone modification
23
broad histone mark
16
narrow histone mark
11
control
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
51
October, 2019
35
February, 2023
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
2
March, 2020
Available data
122
bam
100
bigWig
87
bed narrowPeak
59
tsv
38
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
6
bed bed3+
6
tagAlign
2
hic
1
bedpe bed3+
1
tar
Organism
168
Homo sapiens
Biosample type
78
tissue
66
cell line
24
primary cell
Organ
943
pancreas
776
liver
587
connective tissue
500
epithelium
490
adipose tissue
392
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
embryo
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
168
AMP
Genome assembly (visualization)
140
GRCh38
110
hg19
Lab
168
AMP-T2D consortium
Audit category:
1
audit script error
biosample_type!
in vitro differentiated cells
organ_slims!
skin of body
BIOSAMPLE
ASSAY
168 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
single cell RNA-seq
FAIRE-seq
pCHi-C
tissue
coronary artery
1
5
36
2
tibial artery
1
23
1
2
islet of Langerhans
4
pulmonary artery
2
ovary
1
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
endothelial cell of umbilical vein
17
2
2
1
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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