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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
470
total RNA-seq
121
ChIP-seq
10
DNase-seq
9
ATAC-seq
6
WGBS
5
pCHi-C
4
single cell RNA-seq
3
small RNA-seq
1
Hi-C
1
RNA microarray
1
RRBS
Assay category
477
Transcription
121
DNA binding
19
DNA accessibility
7
DNA methylation
1
3D chromatin structure
Target of assay
65
histone
65
histone modification
40
broad histone mark
38
control
25
narrow histone mark
18
transcription factor
6
RNA binding protein
Date released
447
February, 2021
57
August, 2017
44
October, 2019
23
October, 2018
18
July, 2019
18
June, 2019
6
November, 2020
3
February, 2020
3
March, 2020
2
April, 2018
2
July, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
May, 2021
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
576
bam
544
bigWig
479
tsv
57
bed narrowPeak
51
bigBed narrowPeak
46
fastq
16
bed bed3+
11
bed broadPeak
10
bigBed broadPeak
8
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
1
bed bed3
1
hdf5
Organism
630
Homo sapiens
Biosample type
591
tissue
in vitro differentiated cells
39
primary cell
1
stem cell
Organ
943
pancreas
776
liver
587
connective tissue
500
epithelium
490
adipose tissue
392
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
bodily fluid
61
eye
43
nerve
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
embryo
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
630
AMP
1
T1D
Genome assembly (visualization)
547
hg19
543
GRCh38
Lab
630
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
16
inconsistent ontology term
Audit category:
12
missing controlled_by
biosample_type!
in vitro differentiated cells
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
631 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
Hi-C
RNA microarray
RRBS
tissue
adipose tissue
382
2
3
3
1
bone tissue
58
tibial nerve
5
35
2
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
+ See 6 more…
primary cell
cardiac fibroblast
5
3
1
osteoblast
5
1
2
1
mesenchymal stem cell
7
pancreatic stellate cell
4
brain pericyte
1
1
+ See 7 more…
stem cell
mesenchymal stem cell
1
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